Userguide
1. Gene sequence and annotation
Redirect to Gene Sequence
1.1 Search across gene ID
1.1.1 Input gene ID.
1.1.2 Click "Submit" button to search.
1.2 Save result
1.2.1 Click "Copy Cds/Pep Sequence to the clipboard" button to download the result.
Note: The detail information of the target gene including coding sequence (CDS), peptide
sequence, functional annotation, and expression data.
2. Expression level of genes in cabbage cultivars 02-12 and D134
Redirect to Heatmap
2.1 Search across gene ID
2.1.1 Select genome to search.
2.1.2 Input gene ID.
2.1.3 Click "Submit Query" button to search.
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2.2 Save result
2.2.1 Click "save as png" button to download the result.
3. BLAST
Redirect to BLAST
3.1 Search across sequence(s)
3.1.1 Paste query sequence(s) or drag file containing query sequence(s) in fasta format.
3.1.2 Select database.
3.1.3 Click "BLAST" button to search.
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3.2 Search across results
3.2.1 Click sequence ID to search alignment.
3.2.2 Click "SVG/PNG" button to download the alignment result.
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4. Gene family search
Redirect to Gene Family Search
4.1 Search across gene family name/PFAM ID
4.1.1 Select genome to search.
4.1.2 Input gene family name/PFAM ID.
4.1.3 Click "Submit" button to search.
4.2 Search across results
4.2.1 Click "Download DNA/Pep sequences in FASTA format" button to download the result as a
fasta file.
4.2.2 Click gene ID to search the gene in other page.
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5. Transcription factor search
Redirect to Transcription Factor Search
5.1 Search across transcription factor name
5.1.1 Select genome to search.
5.1.2 Input transcription factor name.
5.1.3 Click "Submit" button to search.
5.2 Search across results
5.2.1 Click "Download DNA/Pep sequences in FASTA format" button to download the result as a
fasta file.
5.2.2 Click gene ID to search the gene in other page.
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6. Protein kinase search
Redirect to Protein Kinase Search
6.1 Search across protein kinase name.
6.1.1 Select genome to search.
6.1.2 Input protein kinase name.
6.1.3 Click "Submit" button to search.
6.2 Search across results
6.2.1 Click "Download DNA/Pep sequences in FASTA format" button to download the result as a
fasta file.
6.2.2 Click gene ID to search the gene in other page.
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7. Flanking sequence finder
Redirect to Flanking sequence finder
7.1 Search across coordinates.
7.1.1 Input gene ID.
7.1.2 Input upstream sequence length.
7.1.3 Input downstream sequence length.
7.1.4 Click "Search" button to search.
8. GO enrichment
Redirect to GO Enrichment
8.1 Search across Gene ID.
8.1.1 Select genome to search.
8.1.2 Input a list of Gene IDs.
8.1.3 Select Gene Ontology to search.
8.1.4 Set p-value.
8.1.5 Click "Submit Query" button to search.
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8.2 Search across results
8.2.1 Click GO ID to search the GO term information in other page.
8.2.2 Click gene list link to search the genes in other page.
9. KEGG enrichment
Redirect to KEGG Enrichment
9.1 Search across Gene ID.
9.1.1 Select genome to search.
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9.1.2 Input a list of Gene IDs.
9.1.3 Set p-value.
9.1.4 Click "Submit Query" button to search.
9.2 Search across results
9.2.1 Click KO ID to search the KO term information in other page.
9.2.2 Click gene list link to search the genes in other page.
10. Genetic variations
Redirect to Variation
10.1 Input target range.
10.2 Click the genetic loci of variation to search detailed information of variation sites.
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11. Genome Browser
Redirect to JBrowse
11.1 Input target range.
11.2 Click the gene ID to search detailed information of gene.
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