Brassica oleracea Genome Database
- Common Name
- Round cabbage
- Scientific name
- Brassica oleracea var. capitata
- Chinese name
- 结球甘蓝（圆球）
- Taxonomy
- Angiospermae/Dicotyledoneae/Rhoeadales/Cruciferae/Brassica BLAST JBrowse Gene Search Download
Overview
Round cabbage (Brassica oleracea var. capitata) is an economically important, nutritionally rich, and widely cultivated vegetable around the world. Heading cabbage contains considerable amounts of bioactive compounds such as glucosinolates, vitamin C, carotenoids and polyphenols.
Genomic information
| Round_Cabbage_02-12 | Round_Cabbage_D134 | Round_Cabbage_JZS | |
|---|---|---|---|
| Sequenced genome size (Mb) | 514,430,932 | 529,919,152 | 561.16 |
| N50 contig length (Mb) | 28,316 | 3,591,417 | 2.37 |
| N50 scaffold length (Mb) | 1,419,759 | 61,740,326 | / |
| Maximum size (Mb) | 7,482,359 | 74,838,096 | / |
| Gaps | 37,382,998 | 329,204 | / |
| BUSCO (complete) | 96.3% | 95.7% | 97.1% |
Reference
1. Liu, S., Liu, Y., Yang, X. et al. The Brassica oleracea genome reveals the asymmetrical evolution of polyploid genomes. Nat Commun 5, 3930 (2014).https://doi.org/10.1038/ncomms4930
2. Lv, H., Wang, Y., Han, F. et al. A high-quality reference genome for cabbage obtained with SMRT reveals novel genomic features and evolutionary characteristics. Sci Rep 10, 12394 (2020). https://doi.org/10.1038/s41598-020-69389-x
3. Cai, X., Wu, J., Liang, J. et al. Improved Brassica oleracea JZS assembly reveals significant changing of LTR-RT dynamics in different morphotypes. Theor Appl Genet 133, 3187–3199 (2020). https://doi.org/10.1007/s00122-020-03664-3